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Oxygen Homeostasis and Its Dynamics

Author(s): Ishimura, Y.
Edition: 1st
ISBN10: 4431702024
ISBN13: 9784431702023
Cover: Hardcover
 
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Table of Contents
Foreword V(2)
Preface VII(8)
List of Contributors XV(4)
Opening Remarks XIX
Part 1 Cytochrome Oxidases 3(124)
Structure and Possible Mechanism of Action of Cytochrome c Oxidase from the Soil Bacterium Paracoccus denitrificans
3(10)
H. Michel
S. Iwata
C. Ostermeier
Crystal Structure and Reaction Mechanism of Bovine Heart Cytochrome c Oxidase
13(11)
S. Yoshikawa
K. Shinzawa-Itoh
T. Tsukihara
Cooperation of Two Quinone-Binding Sites in the Oxidation of Substrates by Cytochrome bo
24(9)
M. Sato-Watanabe
T. Mogi
H. Miyoshi
Y. Anraku
Rapid Formation of a Semiquinone Species on Oxidation of Quinol by the Cytochrome bo(3) Oxidase from Escherichia coli
33(7)
J.P. Osborne
S.M. Musser
B.E. Schultz
D.E. Edmondson
S.I. Chan
R.B. Gennis
Coupling of Ion and Charge Movements: From Peroxidases to Protonmotive Oxidases
40(7)
P.R. Rich
B. Meunier
S. Junemann
Ligand Dynamics in the Binuclear Site in Cytochrome Oxidase
47(10)
G.T. Babcock
G. Deinum
J. Hosler
Y. Kim
M. Pressler
D.A. Proshlyakov
H. Schelvis
C. Varotsis
S. Ferguson-Miller
Time-Resolved Resonance Raman Study of Dioxygen Reduction by Cytochrome c Oxidase
57(15)
T. Kitagawa
T. Ogura
S. Hirota
D.A. Proshlyakov
J. Matysik
E.H. Appelman
K. Shinzawa-Itoh
S. Yoshikawa
Human Cytochrome c Oxidase Analyzed with Cytoplasts
72(12)
Y. Kagawa
Redox Behavior of Copper A in Cytochrome Oxidase in the Brain In Vivo: Its Clinical Significance
84(14)
Y. Hoshi
H. Eda
O. Hazeki
Y. Nomura
Y. Kakihana
S. Kuroda
M. Tamura
Crystallization of Bovine Heart Mitochondrial Cytochrome c Oxidase for X-Ray Diffraction at Atomic Resolution (2.8 A)
98(4)
K. Shinzawa-Itoh
R. Yaono
R. Nakashima
H. Aoyama
E. Yamashita
T. Tomizaki
T. Tsukihara
S. Yoshikawa
Mechanism of Dioxygen Reduction by Cytochrome c Oxidase as Studied by Time-Resolved Resonance Raman Spectroscopy
102(4)
T. Ogura
D.A. Proshlyakov
J. Matysik
E.H. Appelman
K. Shinzawa-Itoh
S. Yoshikawa
T. Kitagawa
Coupling of Proton Transfer to Oxygen Chemistry in Cytochrome Oxidase: The Roles of Residues 167 and E243
106(6)
B. Meunier
P.R. Rich
Respiration of Helicobacter pylori, cb-Type Cytochrome c Oxidase, and Inhibition of NADH Oxidation by O(2)
112(8)
N. Sone
S. Tsukita
K. Nagata
T. Tamura
The Regulation by ATP of the Catalytic Activity and Molecular State of Thiobacillus novellus Cytochrome c Oxidase
120(7)
K. Shoji
K. Hori
M. Tanigawa
T. Yamanaka
Part 2 Cytochrome P-450 Monooxygenases 127(136)
Structure-Function Studies of P-450BM-3
127(12)
S.E. Graham-Lorence
J.A. Peterson
Oxygen Binding to P-450(cam) Induces Conformational Changes of Putidaredoxin in the Ferrous P-450(cam)-Reduced Putidaredoxin Complex
139(8)
H. Shimada
M. Unno
Y. Kimata
R. Makino
F. Masuya
T. Obata
H. Hori
Y. Ishimura
Crystal Structure of Nitric Oxide Reductase Cytochrome P-450(nor) from Fusarium oxysporum
147(9)
S.-Y. Park
H. Shimizu
S. Adachi
Y. Shiro
T. Iizuka
H. Shoun
Analysis of NAD(P)H Binding Site of Cytochrome P-450(nor)
156(5)
N. Takaya
T. Kudo
H. Shoun
Substitutions of Artificial Amino Acids O-Methyl-Thr, O-Methyl-Asp, S-Methyl-Cys, and 3-Amino-Ala for Thr-252 of Cytochrome P-450(cam): Probing the Importance of the Hydroxyl Group of Thr-252 for Oxygen Activation
161(5)
Y. Kimata
H. Shimada
T. Hirose
Y. Ishimura
From a Monooxygenase to an Oxidase: The P-450 BM3 Mutant T268A
166(6)
G. Truan
J.A. Peterson
Thiolate Adducts of the Myoglobin Cavity Mutant H93G as Models for Cytochrome P-450
172(9)
M.P. Roach
S. Franzen
P.S.H. Pang
W.H. Woodruff
S.G. Boxer
J.H. Dawson
Pronounced Effects of Axial Thiolate Ligand on Oxygen Activation by Iron Porphyrin
181(8)
T. Higuchi
Y. Urano
M. Hirobe
T. Nagano
Superoxide via Peroxynitrite Blocks Prostacyclin Synthesis
189(10)
V. Ullrich
M. Zou
The N=N Bond Cleavage of Angeli's Salt Is Markedly Enhanced by Cytochrome P-450 1A2: Effects of Distal Amino Acid Mutations on the Formation of Nitric Oxide Complexes
199(5)
Y. Shibata
H. Sato
I. Sagami
T. Shimizu
Langmuir-Blodgett Films of Cytochrome P-450(scc): Molecular Organization and Thermostability
204(10)
O.L. Guryev
A.V. Krivosheev
S.A. Usanov
Kinetic Analysis of Successive Reactions Catalyzed by Cytochromes P-450(17XXX, lyase) and P-450(11Beta)
214(7)
T. Yamazaki
H. Tagashira-Ikushiro
T. Ohno
T. Imai
S. Kominami
Changing Substrate Specificity and Product Pattern in Adrenal Cytochrome P-450-Dependent Steroid Hydroxylases
221(10)
B. Bottner
P. Cao
R. Bernhardt
Inhibition Studies of Steroid Conversions Mediated by Human CYP11B1 and CYP11B2 Expressed in Cell Cultures
231(6)
K. Denner
R. Bernhardt
Effects of ACTH and Angiotensin II on the Novel Cell Layer Without Corticosteroid-Synthesizing Activity in Rat Adrenal Cortex
237(7)
H. Miyamoto
F. Mitani
K. Mukai
Y. Ishimura
Cell-Specific and Hormonally Regulated Gene Expression Directed by the CYP11B1 Gene Promoter in Rat Adrenal Cortex
244(4)
K. Mukai
F. Mitani
Y. Ishimura
Gene Organization and Genetic Defects of Bilirubin UDP-Glucuronosyltransferase
248(4)
Y. Emi
S. Ikushiro
T. Iyanagi
Imaging of Calcium Oscillations and Activity of Cytochrome P-450(scc) in Adrenocortical Cells
252(11)
T. Kimoto
H. Mukai
R. Homma
T. Bettou
D. Nishimura
Y. Ohta
S. Kawato
Part 3 Various Types of Oxidases and Oxygenases 263(114)
Fundamentally Divergent Strategies for Oxygen Activation by Fe(2+) and Fe(3+) Catecholic Dioxygenases
263(13)
J.D. Lipscomb
A.M. Orville
R.W. Frazee
M.A. Miller
D.H. Ohlendorf
Three-Dimensional Structure of an Extradiol-Type Catechol Ring Cleavage Dioxygenase BphC derived from Pseudomonas sp. strain KKS102: Structural Features Pertinent to Substrate Specificity and Reaction Mechanisms
276(6)
T. Senda
K. Sugimoto
T. Nishizaki
M. Okano
T. Yamada
E. Masai
M. Fukuda
Y. Mitsui
Probing the Reaction Mechanism of Protocatechuate 3,4-Dioxygenase with X-Ray Crystallography
282(7)
A.M. Orville
J.D. Lipscomb
D.H. Ohlendorf
Nitric Oxide Synthases: Structure, Function, and Control
289(9)
D. Harris
S.M.E. Smith
C. Brown
J.C. Salerno
Electron Paramagnetic Resonance Studies on Substrate Binding to the NO Complex of Neuronal Nitric Oxide Synthase
298(6)
C.T. Migita
J.C. Salerno
B.S.S. Masters
M. Ikeda-Saito
Heme Oxygenase: A Central Enzyme of Oxygen-Dependent Heme Catabolism and Carbon Monoxide Synthesis
304(11)
M. Ikeda-Saito
H. Fujii
K.M. Matera
S. Takahashi
C.T. Migita
D.L. Rousseau
T. Yoshida
Heme Degradation Mechanism by Heme Oxygenase: Conversion of XXX-meso-Hydroxyheme to Verdoheme IX(XXX)
315(7)
H. Fujii
K.M. Matera
S. Takahashi
C.T. Migita
H. Zhou
T. Yoshida
M. Ikeda-Saito
A Spectroscopic Study on the Intermediates of Heme Degradation by Heme Oxygenase
322(6)
Y. Omata
M. Noguchi
Expression of Heme Oxygenase and Inducible Nitric Oxide Synthase mRNA in a Human Glioblastoma Cell Line
328(5)
E. Hara
K. Takahashi
H. Fujita
S. Shibahara
The Mechanism of Conversion of Xanthine Dehydrogenase to Xanthine Oxidase
333(7)
T. Nishino
K. Okamoto
S. Nakanishi
H. Hori
T. Nishino
Mechanism-Based Molecular Design of Peroxygenases
340(14)
Y. Watanabe
S. Ozaki
T. Matsui
Catalytic Roles of the Distal Site Hydrogen Bond Network of Peroxidases
354(5)
S. Nagano
M. Tanaka
K. Ishimori
I. Morishima
Y. Watanabe
M. Mukai
T. Ogura
T. Kitagawa
Catalytic Intermediates of Polyethylene-Glycolated Horseradish Peroxidase in Benzene
359(4)
S. Ozaki
Y. Inada
Y. Watanabe
Formation of a Hydroperoxy Complex of Heme During the Reaction of Ferric Myoglobin with H(2)O(2)
363(4)
T. Egawa
H. Shimada
Y. Ishimura
Photooxidation in Ternary System Human Serum Albumin-Chlorin e(6)-Tryptophan
367(10)
E.V. Petrotchenko
G.A. Kochubeev
S.A. Usanov
P.A. Kiselev
Part 4 Oxygen Sensing and Regulation of Blood Flow 377(116)
Tissue Oxygen Pressure and Oxygen Sensing by the Carotid Body
377(11)
D.F. Wilson
S.A. Vinogradov
A. Mokashi
A. Pastuszko
S. Lahiri
M.W. Dewhirst
Molecular Mechanisms of Hypoxia-Induced Angiogenesis
388(12)
E. Ikeda
A. Damert
W. Risau
Mechanisms of Pulmonary Vasodilatation and Ductus Arteriosus Constriction by Normoxia
400(10)
E.K. Weir
H.L. Reeve
S. Tolarova
D.N. Cornfield
D.P. Nelson
S.L. Archer
Biological Impediment to Oxygen Sensing in Injured Pulmonary Microcirculation Exposed to a High-Oxygen Environment
410(11)
K. Yamaguchi
K. Suzuki
K. Nishio
T. Aoki
Y. Suzuki
A. Miyata
N. Sato
K. Naoki
H. Kudo
Transcriptional Responses Mediated by Hypoxia-Inducible Factor 1
421(7)
G.L. Semenza
F. Agani
N. Iyer
B.-H. Jiang
E. Laughner
S. Leung
R. Roe
C. Wiener
A. Yu
Differences in Particle Size and Oxygen-Binding Affinity Between Cross-Linked Hemoglobin and Hemoglobin Vesicle
428(6)
S. Takeoka
Y. Mano
E. Tsuchida
Activation of Gene Expression of Collagenase and ICAM-1 by UVA Radiation and by Exposure to Singlet Oxygen
434(4)
K. Briviba
M. Wlaschek
K. Scharffetter-Kochanek
S. Grether-Beck
J. Krutmann
H. Sies
Redox Regulation of the Nuclear Factor Kappa B (NF-kB) Signaling Pathway and Disease Control
438(12)
T. Okamoto
S. Sakurada
J.-P. Yang
N. Takahashi
Thioredoxin and Its Involvement in the Redox Regulation of Transcription Factors, NF-kB and AP-1
450(7)
T. Ohno
K. Hirota
H. Nakamura
H. Masutani
T. Sasada
J. Yodoi
Inhibition of Cytokines and ICAM-1 Induction in Rheumatoid Fibroblasts by anti-NF-kB Reagents
457(7)
S. Sakurada
T. Kato
K. Mashiba
J.-P. Yang
T. Okamoto
Detection of a Nuclear 60-kDa Protein Coimmunoprecipitated with Human Thioredoxin
464(5)
A. Nishiyama
K. Furuke
K. Hirota
H. Masutani
J. Yodoi
Ito Cells: A Putative Cellular Component Responsible for Carbon Monoxide-Mediated Microvascular Relaxation in the Rat Liver
469(4)
Y. Wakabayashi
S. Kashiwagi
N. Goda
Y. Ishimura
M. Suematsu
K(+) Channels and the Normoxic Constriction of the Rabbit Ductus Arteriosus
473(6)
H.L. Reeve
M. Tristani-Firouzi
S. Tolarova
S.L. Archer
E.K. Weir
Modulation of Adhesion Molecule Expression in Pulmonary Vascular Endothelium by Oxygen
479(5)
Y. Suzuki
T. Aoki
K. Nishio
O. Takeuchi
K. Toda
K. Suzuki
A. Miyata
N. Sato
K. Naoki
H. Kudo
K. Yamaguchi
Cross Talk Between Nitric Oxide and Cyclooxygenase Pathways in Glomerular Mesangial Cells
484(9)
T. Tetsuka
A.R. Morrison
Part 5 Pathophysiology and Physiology of Gaseous Monoxides 493(124)
Pathophysiological Reactivities of Nitric Oxide
493(12)
A.J. Gow
R. Foust III
M. McClelland
S. Malcolm
H. Ischiropoulos
Defenses Against Peroxynitrite
505(5)
H. Sies
H. Masumoto
V. Sharov
K. Briviba
Bioactive 6-Nitronorepinephrine Formation Requiring Nitric Oxide Synthase in Mammalian Brain
510(8)
T. Nakaki
F. Shintani
S. Kanba
E. Suzuki
M. Asai
Role of Nitric Oxide in the Regulation of Cerebral Blood Flow in Conscious Rats
518(19)
S. Takahashi
L. Sokoloff
Physiological Implication of Induction of Heme Oxygenase-1 Gene Expression
537(7)
S. Shibahara
Carbon Monoxide: Toxic Waste or Endogenous Modulator of Hepatobiliary Function?
544(6)
M. Suematsu
T. Sano
S. Takeoka
Y. Wakabayashi
T. Yonetani
E. Tsuchida
Y. Ishimura
Microspectrophotometry of Nitric Oxide-Dependent Changes in Hemoglobin in Single Red Blood Cells Incubated with Stimulated Macrophages
550(7)
T. Shiraishi
K. Tsujita
K. Kakinuma
An Antioxidant Role of Nitric Oxide in Modulation of Oxidative Stress in Human Placental Trophoblastic Cells
557(5)
N. Goda
M. Natori
M. Suematsu
K. Kiyokawa
Y. Ishimura
Y. Yoshimura
S. Nozawa
Liberation of Nitric Oxide from S-Nitrosothiols
562(7)
M. Kashiba-Iwatsuki
K. Kitoh
M. Nishikawa
E.F. Sato
M. Inoue
Change of Nitric Oxide Concentration in Exhaled Gas After Lung Resection
569(7)
H. Horinouchi
M. Kohno
M. Gika
A. Tajima
K. Kuwabara
A. Yoshizu
M. Naruke
Y. Izumi
M. Kawamura
K. Kikuchi
K. Kobayashi
Induction of NADPH Cytochrome P-450 Reductase in Kupffer Cells After Chronic Ethanol Consumption Associated with Increase of Superoxide Anion Formation
576(4)
H. Yokoyama
Y. Akiba
M. Fukuda
Y. Okamura
T. Mizukami
M. Matsumoto
H. Suzuki
H. Ishii
In Vivo Measurement of Superoxide in the Cerebral Cortex Utilizing Cypridina luciferin analog (MCLA) Chemiluminescence
580(5)
D. Uematsu
Y. Fukuuchi
N. Araki
S. Watanabe
Y. Itoh
K. Yamaguchi
Effects of Zinc Protoporphyrin IX, a Heme Oxygenase Inhibitor, on Mitochondrial Membrane Potential in Rat Cultured Hepatocytes
585(6)
Y. Shinoda
M. Suematsu
Y. Wakabayashi
Y. Ishimura
Structure and Function of NO Reductase with Oxygen-Reducing Activity
591(6)
T. Fujiwara
T. Akiyama
Y. Fukumori
Oxidative Modification of Apolipoprotein E3 and Its Biological Significance
597(6)
S. Hara
T. Tanaka
M. Yamada
Y. Nagasaka
K. Nakamura
Sequential Multistep Mechanisms for Leukocyte Adhesion: Applicable to Lung Microcirculation?
603(6)
T. Aoki
Y. Suzuki
K. Suzuki
A. Miyata
K. Nishio
N. Sato
K. Naoki
H. Kudo
H. Tsumura
K. Yamaguchi
Role of Nitric Oxide in Autoregulation of Cerebral Blood Flow in the Rat
609(8)
K. Tanaka
Y. Fukuuchi
T. Shirai
S. Nogawa
H. Nozaki
E. Nagata
T. Kondo
S. Koyama
T. Dembo
Key Word Index 617

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