Handbook of Molecular Microbial Ecology II Metagenomics in Different Habitats
, by de Bruijn, Frans J.- ISBN: 9780470647196 | 0470647191
- Cover: Hardcover
- Copyright: 9/27/2011
Frans J. de Bruijn received his Ph.D. (Cellular and Developmental Biology; Microbial Genetics) from Harvard University in 1983.? His resume reflects an array of experiences as a teacher, researcher, board member and a plethora of other accomplishments. He is currently?Director of Research at the Laboratory for Plant-Microbe Interactions in Toulouse, France.
Preface | |
Contributors | |
Introduction | |
Viral Genomes | |
Viral metagenomics | |
Methods in Viral Metagenomics | |
Metagenomic contrasts of viruses in soil and aquatic environments | |
Biodiversity and biogeography of phages in modern stromatolites and thromolites | |
Assembly of Viral Metagenomes from Yellowstone Hot Springs Reveals Phylogenetic Relationships and Host Co-Evolution | |
Next-generation sequencing and metagenomic analysis; a universal diagnostic tool in plant pathology | |
Direct Metagenomic Detection of Viral Pathogens in Human Specimens Using an Unbiased High-throughput Sequencing Approach | |
The Soil Habitat | |
Soil based Metagenomics | |
Methods in Metagenomic DNA, RNA and Protein Isolation from Soil | |
Soil Microbial DNA Purification Strategies for Multiple Metagenomic Applications | |
Application of PCR-DGGE and metagenome walking to retrieve full-length functional genes from soil | |
Actinobacterial diversity associated with Antarctic Dry Valley mineral soils | |
Targetting major soil-borne bacterial lineages using large-insert metaenomic approaches | |
Novelty and uniqueness patterns of rare members of the soil biosphere | |
Extensive phylogenetic analysis of a soil bacterial community illustrates extreme taxon evenness and the effects of amplicon length, degree of coverage, and DNA fractionation on classification and ecological parameters | |
The Antibiotic Resistance: Origins, Diversity, and Future Prospects | |
The Digestive Tract | |
Functional Intestinal Metagenomics | |
Assessment and improvement of methods for microbial DNA preparation from fecal Samples | |
Role of dysbiosis in inflammatory bowel diseases | |
Culture independent analysis of the human gut microbiota and its activities | |
Complete genome of an uncultured endowsymbiont coupling nitrogen fixation to cellulolysis with protest cells in termite gut | |
Cloning and identification of genes encoding acidic cellulases from metagenomes of buffalo rumen | |
Marine and Lakes | |
Microbial diversity in the deep seas and the underexplored "rare biosphere" | |
Bacterial Community Structure and Dynamics in a Seasonally Anoxic Fjord | |
Adaptation to nutrient availability in marine microorganisms by gene gain and loss | |
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities | |
Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a lacustrine ecosystem | |
Metagenomics of the marine subsurface: the first glimpse from the Peru Margin, ODP Site 122 | |
A targeted metagenomic approach to determine the 'population genome' of marine Synechoccus | |
Diversity and role of bacterial integron/gene cassette metagenome in extreme marine environments | |
Other Habitats | |
The Olavius algarvensis metagenome revisited: lessons learned from the analysis of the low diversity microbial consortium of a gutless marine worm | |
Microbiome diversity in human saliva | |
Approaches to understanding population level functional diversity in a microbial community | |
A functional metagenomic approach for discovering nickel resistance genes from the rhizosphere of an acid mine drainage environment | |
The Microbiome of Leaf-cutter Ant Fungus Gardens | |
Diversity of archaea in terrestrial hot springs and role In ammonia oxidation | |
Colinization of nascent, deep-sea hydrothermal vents by a novel Archaeal and Nanoarchaeal assemblage | |
Analysis of the Metagenome from a biogas-producing microbial Community by means of Bioinformatucs Methods | |
Amplicon pyrosequencing analysis of endosymbiont population structure | |
Investigative bacterial diversity along alkaline hot spring thermal gradients by barcoded pyrosequencing | |
Genetic characterization of microbial communities living at the surface of building stones | |
Novel aromatic degradation pathway genes and their organization as revealed by metagenomic analysis | |
Functional screening of a wide host-range metagenomic library from a wastewater treatment plant yields a novel alcohol/aldehyde dehydrogenase | |
Aromatic hydrocarbon degradation genes from chronically polluted Subantarctic marine sediments | |
Isolation and characterization if alkane hydroxylases from a metagenomic llibrary of Pacific deep-sea sediment | |
Biocatalysts and Natural Products | |
Emerging Fields in Functional Metagenomics and its Industrial Relevance - Overcoming Limitations and Redirecting the Search for Novel Biocatalysts | |
Carboxylesterases and Lipases from Metagenomes | |
Expanding small molecule functional megenomics through parallel screening of broad host-range cosmid environmental DNA libraries in diverse Proteobacteria | |
Biomedicinals from the microbial metagenomes of marine invertebrates | |
Molecular characterization of TEM-type beta-Lactamases identified in Cold-seep sediments of Edison Seamount | |
Identification of Novel Bioactive Compounds from the Metagenome of the Marine | |
Functional Viral Metagenomics and the Development of New Enzymes for DNA and RNA Amplification and Sequencing | |
Summary | |
Future of metagenomics, metatranscriptomics, metabolomics, metaproteomics and single cell analysis: A perspective | |
Darwin in the 21st Century: Natural Selection, Molecular Biology, and Species Concepts | |
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