Parallel Computing : Software Technology, Algorithms, Architectures and Applications:Proceedings of the International Conference ParCo2003, Dresden, Germany

, by Joubert, G. R.; Nagel, Wolfgang E.; Peters, F. J.; Walter, W. V.

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ISBN: 9780444516893 | 0444516891
Cover: Hardcover
Copyright: 10/31/2004

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Advances in Parallel Computing series presents the theory and use of of parallel computer systems, including vector, pipeline, array, fifth and future generation computers and neural computers. This volume features original research work, as well as accounts on practical experience with and techniques for the use of parallel computers.

Preface

Sponsors, Exhibitors/Participants in the industrial track

vii

Committees

viii

Invited Papers

(20)

Parallel Machines and the "Digital Brain" - An Intricate Extrapolation on Occasion of JvN's 100-th Birthday

(10)

F. Hossfeld

So Much Data, So Little Time

(8)

C. Hansen, S. Parker, C. Gribble

Software Technology

(146)

On Compiler Support for Mixed Task and Data Parallelism

(8)

T. Rauber, R. Reilein, G. Rünger

Distributed Process Networks - Using Half FIFO Queues in CORBA

(8)

A. Amar, P. Boulet, J.-L. Dekeyser, F. Theeuwen

An efficient data race detector backend for DIOTA

(8)

M. Ronsse, B. Stougie, J. Maebe, F. Cornelis, K. De Bosschere

Pipelined parallelism for multi join queries on shared nothing machines

(8)

M. Bamha, M. Exbrayat

Towards the Hierarchical Group Consistency for DSM systems: an efficient way to share data objects

(8)

L. Lefevre, A. Bonhomme

An operational semantics for skeletons

(8)

M. Aldinucci, M. Danelutto

A Programming Model for Tree Structured Parallel and Distributed Algorithms and its Implementation in a Java Environment

(8)

H. Moritsch

A Rewriting Semantics for an Event-Oriented Functional Parallel Language

(8)

F. Loulergue

RMI-like communication for migratable software components in HARNESS

(8)

M. Migliardi, R. Podesta

Semantics of a Functional BSP Language with Imperative Features

(8)

F. Gava, F. Loulergue

The Use of Parallel Genetic Algorithms for Optimization in the Early Design Phases

103

(8)

E. Slaby, W. Funk

An Integrated Annotation and Compilation Framework for Task and Data Parallel Programming in Java

111

(8)

H.J. Sips, K. van Reeuwijk

On The Use of Java Arrays for Sparse Matrix Computations

119

(8)

G. Gundersen, T. Steihaug

A Calculus of Functional BSP Programs with Explicit Substitution

127

(8)

F. Loulergue

JToe: a Java API for Object Exchange

135

(8)

S. Chaumette, P. Grange, B. Métrot, P. Vignéras

A Modular Debugging Infrastructure for Parallel Programs

143

(8)

D Kranzlmüller, Ch. Schaubschläger, M. Scarpa, J. Volkert

Toward a Distributed Computational Steering Environment based on CORBA

151

(8)

O. Coulaud, M. Dussere, A. Esnard

Parallel Decimation of 3D Meshes for Efficient Web-Based Isosurface Extraction

159

(8)

A. Clematis, D. D'Agostino, M Mancini, V. Gianuzzi

Parallel Programming

167

(50)

MPI on a Virtual Shared Memory

169

(8)

F. Baiardi, D. Guerri, P. Mori, L. Ricci, L. Vaglini

OpenMP vs. MPI on a Shared Memory Multiprocessor

177

(8)

J. Behrens, O. Haan, L. Kornblueh

MPI and OpenMP implementations of Branch-and-Bound Skeletons

185

(8)

I. Dorta, C. León, C. Rodriguez, A. Rojas

Parallel Overlapped Block-Matching Motion Compensation Using MPI and OpenMP

193

(8)

E. Pschernig, A. Uhl

A comparison of OpenMP and MPI for neural network simulations on a SunFire 6800

201

(8)

A. Strey

Comparison of Parallel Implementations of Runge-Kutta Solvers: Message Passing vs. Threads

209

(8)

M. Korch, T. Rauber

Scheduling

217

(24)

Extending the Divisible Task Model for Workload Balancing in Clusters

219

(6)

U. Rerrer, O. Kao, F. Drews

The generalized diffusion method for the load balancing problem

225

(8)

G. Karagiorgos, N. Missirlis, F. Tzaferis

Delivering High Performance to Parallel Applications Using Advanced Scheduling

233

(8)

N. Drosinos, G. Goumas, M. Athanasaki, N. Koziris

Algorithms

241

(88)

Multilevel Extended Algorithms in Structural Dynamics on Parallel Computers

243

(8)

K. Elssel, H. Voss

Parallel Model Reduction of Large-Scale Unstable Systems

251

(8)

P. Benner, M. Castillo, E.S. Quintana-Orti, G. Quintana-Orti

Parallel Decomposition Approaches for Training Support Vector Machines

259

(8)

T. Serafini, G. Zanghirati, L. Zanni

Fast parallel solvers for fourth-order boundary value problems

267

(8)

M. Jung

Parallel Solution of Sparse Eigenproblems by Simultaneous Rayleigh Quotient Optimization with FSAI preconditioning

275

(8)

L. Bergamaschi, Á. Martinez, G. Pini

An Accurate and Efficient Selfverifying Solver for Systems with Banded Coefficient Matrix

283

(8)

C. Hölbig, W. Krämer, T.A. Diverio

3D parallel calculations of dendritic growth with the lattice Boltzmann method

291

(6)

W. Miller, F. Pimentel, I. Rasin, U. Rehse

Distributed Negative Cycle Detection Algorithms

297

(8)

L. Brim, I. Cerná, L. Hejtmánek

A Framework for Seamlesly Making Object Oriented Applications Distributed

305

(8)

S. Chaumette, P. Vignéras

Performance Evaluation of Parallel Genetic Algorithms for Optimization Problems of Different Complexity

313

(8)

P. Köchel, M. Riedel

Extensible and Customizable Just-In-Time Security (JITS) Management of Client-Server Communication in Java

321

(8)

S. Chaumette, P. Vignéras

Applications & Simulation

329

(84)

An Object-Oriented Parallel Multidisciplinary Simulation System The SimServer

331

(8)

U. Tremel, F. Deister, K.A. Sørensen, H. Rieger, N.P. Weatherill

Computer Simulation of Action Potential Propagation on Cardiac Tissues: An Efficient and Scalable Parallel Approach

339

(8)

J.M. Alonso, J.M. Ferrero (Jr), V. Hernández, G. Moltó, M. Monserrat, J. Saiz

MoDySim A parallel dynamical UMTS simulator

347

(8)

M.J. Fleuren, H. Stüben, G.F Zegwaard

apeNEXT: a Multi-TFlops Computer for Elementary Particle Physics

355

(8)

F. Bodin, Ph. Boucaud, N. Cabibbo, F. Di Carlo, R. De Pietri, F. Di Renzo, H. Kaldass, A. Lonardo, M. Lukyanov, S. de Luca, J. Micheli, V. Morenas, N. Paschedag, O. Pene, D. Pleiter, F. Rapuano, L. Sartori, F. Schifano, H. Simma, R. Tripiccione, P. Vicini

The Parallel Model System LM-MUSCAT for Chemistry-Transport Simulations: Coupling Scheme, Parallelization and Applications

363

(8)

R. Wolke, O. Knoth, O. Hellmuth, W. Schröder; E. Renner

Real-time Visualization of Smoke through Parallelizations

371

(8)

T. Vik, A.C. Elster; T. Hallgren

Parallel Simulation of Cavitated Flows in High Pressure Systems

379

(8)

P.A. Adamidis, F. Wrona, U. Iben, R. Rabenseifner, C.-D. Munz

Improvements in black hole detection using parallelism

387

(8)

F. Almeida, E. Mediavilla, A. Oscoz, F. de Sande

High Throughput Computing for Neural Network Simulation

395

(8)

J. Culloty, P. Walsh

Parallel algorithms and data assimilation for hydraulic models

403

(10)

C. Mazauric, V.D. Tran, W. Castaings, D. Froehlich, F.X Le Dimet

Multimedia Applications

413

(26)

Parallelization of VQ Codebook Generation using Lazy PNN Algorithm

415

(8)

A. Wakatani

A Scalable Parallel Video Server Based on Autonomous Network-attached Storage

423

(8)

G. Tan, S. Wu, H. Jin, F. Xian

Efficient Parallel Search in Video Databases with Dynamic Feature Extraction

431

(8)

S. Geisler

Architectures

439

(26)

Introspection in a Massively Parallel PIM-Based Architecture

441

(8)

H.P. Zima

Time-Transparent Inter-Processor Connection Reconfiguration in Parallel Systems Based on Multiple Crossbar Switches

449

(8)

E. Laskowski, M. Tudruj

SIMD design to solve partial differential equations

457

(8)

R.W. Schulze

Caches

465

(18)

Trade-offs for Skewed-Associative Caches

467

(8)

H. Vandierendonck, K. De Bosschere

Cache Memory Behavior of Advanced PDE Solvers

475

(8)

D. Wallin, H. Johansson, S. Holmgren

Performance

483

(50)

A Comparative Study of MPI Implementations on a Cluster of SMP Workstations

485

(8)

G. Rünger, S. Trautmann

MARMOT: An MPI Analysis and Checking Tool

493

(8)

B. Krammer, K. Bidmon, M.S. Müller M.M. Resch

BenchlT - Performance Measurement and Comparison for Scientific Applications

501

(8)

G. Juckeland, S. Börner M. Kluge, S. Köling, W.E. Nagel, S. Pflüger, H. Röding, S. Seidl, T. William, R. Wloch

Performance Issues in the Implementation of the M-VIA Communication Software

509

(8)

Ch. Fearing, D. Hickey, P.A. Wilsey, K. Tomko

Performance and performance counters on the Itanium 2-A benchmarking case study

517

(8)

U. Andersson, P. Ekman, P. Öster

On the parallel prediction of the RNA secondary structure

525

(8)

F. Almeida, R. Andonov, L.M. Moreno, V. Poirriez, M. Pérez, C. Rodriguez

Clusters

533

(44)

MDICE - a MATLAB Toolbox for Efficient Cluster Computing

535

(8)

R. Pfarrhofer, P. Bachhiesl, M. Kelz, H. Stögner, A. Uhl

Parallelization of Krylov Subspace Methods in Multiprocessor PC Clusters

543

(8)

D. Picinin Jr., A.L. Martinotto, R.V. Dorneles, R.L. Rizzi, C. Hölbig, T.A. Diverio, P.O.A. Navaux

First Impressions of Different Parallel Cluster File Systems

551

(8)

T.P. Boenisch, P.W. Haas, M. Hess, B. Krischok

Fast Parallel I/O on ParaStation Clusters

559

(10)

N. Eicker, F. Isaila, T. Lippert, T. Moschny, W.F. Tichy

PRFX: a runtime library for high performance programming on clusters of SMP nodes

569

(8)

B. Cirou, M.C. Counilh, J. Roman

Grids

577

(48)

Experiences about Job Migration on a Dynamic Grid Environment

579

(8)

R.S. Montero, E. Huedo, I.M. Llorente

Security in a Peer-to-Peer Distributed Virtual Environment

587

(12)

J. Köhnlein

A Grid Environment for Diesel Engine Chamber Optimization

599

(10)

G. Aloisio, E. Blasi, M. Cafaro, I. Epicoco, S. Fiore, S. Mocavero

A Broker Architecture for Object-Oriented Master/Slave Computing in a Hierarchical Grid System

609

(8)

M. Di Santo, N. Ranaldo, E. Zimeo

A framework for experimenting with structured parallel programming environment design

617

(8)

M. Aldinucci, S. Campo, P. Ciullo, M. Coppola, M. Danelutto, P. Pesciullesi, R. Ravazzolo, M. Torquati, M. Vanneschi, C. Zoccolo

Minisymposium - Grid Computing

625

(26)

Considerations for Resource Brokerage and Scheduling in Grids

627

(8)

R. Yahyapour

Job Description Language and User Interface in a Grid context: The EU DataGrid experience

635

(8)

G. Avellino, S. Beco, F. Pacini, A. Maraschini, A. Terracina

On Pattern Oriented Software Architecture for the Grid

643

(8)

H. Prem, N.R. Srinivasa Raghavan

Minisymposium - Bioinformatics

651

(76)

Green Destiny + mpiBLAST = Bioinfomagic

653

(8)

W. Feng

Parallel Processing on Large Redundant Biological Data Sets: Protein Structures Classification with CEPAR

661

(8)

D. Pekurovsky, I. Shindyalov, P. Bourneb

MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations

669

(8)

M. Taiji, T. Narumi, Y. Ohno, A. Konagaya

Structural Protein Interactions: From Months to Minutes

677

(8)

P. Dafas, J. Gomoluch, A. Kozlenkov, M. Schroeder

Spatially Realistic Computational Physiology: Past, Present and Future

685

(10)

J.R. Stiles, W.C. Ford, J.M. Pattillo, T.E. Deerinck, MH. Ellisman, T.M. Bartol, T.J. Sejnowski

Cellular automaton modeling of pattern formation in interacting cell systems

695

(10)

A. Deutsch, U. Börner, M. Bär

Numerical Simulation for eHealth: Grid-enabled Medical Simulation Services

705

(14)

S. Benkner, W. Backfrieder, G. Berti, J. Fingberg, G. Kohring, J.G. Schmidt, S.E. Middleton, D. Jones, J. Fenner

Parallel computing in biomedical research and the search for peta-scale biomedical applications

719

(8)

C.A. Stewart, D. Hart, R.W. Sheppard, H. Li, R. Cruise, V. Moskvin, L. Papiez

Minisymposium - Performance Analysis

727

(58)

Big Systems and Big Reliability Challenges

729

(8)

D.A. Reed, C. Lu, C.L. Mendes

Scalable Performance Analysis of Parallel Systems: Concepts and Experiences

737

(8)

H. Brunst, W.E. Nagel

CrossWalk: A Tool for Performance Profiling Across the User-Kernel Boundary

745

(8)

A.V. Mirgorodskiy, B.P. Miller

Hardware-Counter Based Automatic Performance Analysis of Parallel Programs

753

(8)

F. Wolf, B. Mohr

Online Performance Observation of Large-Scale Parallel Applications

761

(8)

A.D. Malony, S. Shende, R. Bell

Deriving analytical models from a limited number of runs

769

(8)

R.M. Badia, G. Rodriguez, J. Labarta

Performance Modeling of HPC Applications

777

(8)

A. Snavely, X. Gao, C. Lee, L. Carrington, N. Wolter, J. Labarta, J. Gimenez, P. Jones

Minisymposium - OpenMP

785

(50)

Thread based OpenMP for nested parallelization

787

(8)

R. Blikberg, T. Sørevik

OpenMP on Distributed Memory via Global Arrays

795

(8)

L. Huang, B. Chapman, R.A. Kendall

Performance Simulation of a Hybrid OpenMP/MPI Application with HeSSE

803

(8)

R. Aversa, B. Di Martino, M. Bak, S. Venticinque, U. Villano

An environment for OpenMP code parallelization

811

(8)

C.S. Ierotheou, H. Jin, G. Matthews, S.P. Johnson, R. Hood

Hindrances in OpenMP programming

819

(8)

F. Massaioli

Wavelet-Based Still Image Coding Standards on SMPs using OpenMP

827

(8)

R. Norcen, A. Uhl

Minisymposium - Parallel Applications

835

(34)

Parallel Solution of the Bidomain Equations with High Resolutions

837

(8)

X. Cai, G.T. Lines, A. Tveito

Balancing Domain Decomposition Applied to Structural Analysis Problems

845

(8)

P.E. Bjørstad, J. Koster

Multiperiod Portfolio Management Using Parallel Interior Point Method

853

(8)

L. Halada, M. Lucka, I. Melichercik

Performance of a parallel split operator method for the time dependent Schrödinger equation

861

(8)

T. Matthey, T. Sørevik

Minisymposium - Cluster Computing

869

(26)

Design and implementation of a 512 CPU cluster for general purposesupercomputing

871

(8)

B. Vinter

Experiences Parallelizing, Configuring, Monitoring, and Visualizing Applications for Clusters and Multi-Clusters

879

(8)

O.J. Anshus, J.M. Bjørndalen, L.A. Bongo

Cluster Computing as a Teaching Tool

887

(8)

O.J. Anshus, A.C. Elster, B. Vinter

Minisymposium - Mobile Agents

895

(48)

Mobile Agents Principles of Operation

897

(8)

A. Genco

Mobile Agent Application Fields

905

(8)

F Agostaro, A. Genco, S. Sorce

Mobile Agents and Grid Computing

913

(6)

F. Agostaro, A. Chiello, A. Genco, S. Sorce

Mobile Agents, Globus and Resource Discovery

919

(8)

F. Agostaro, A. Genco, S. Sorce

A Mobile Agent Tool for Resource Discovery

927

(8)

F. Agostaro, A. Genco, S. Sorce

Mobile Agents and Knowledge Discovery in Ubiquitous Computing

935

(8)

A. Genco

Author & Subject Index

943

Author Index

945

(6)

Subject Index

951

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Parallel Computing : Software Technology, Algorithms, Architectures and Applications:Proceedings of the International Conference ParCo2003, Dresden, Germany

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Table of Contents

Supplemental Materials